Commit Graph

28 Commits

Author SHA1 Message Date
Nan
e9ea4c5248 5.0 (#62)
* feat: Add Bioxel asset catalog and layer management functionality

- Introduced a new asset catalog definition file for Blender to manage Bioxel assets.
- Implemented layer caching and snapshot functionality in `layer.py`, allowing for VDB file generation and low-resolution snapshots.
- Created node management functions in `node.py` for handling Bioxel nodes within Blender's Geometry Node Editor.
- Added an operator to extract mesh data from selected nodes in `structure.py`.
- Developed UI panels in `panels.py` for layer management, including import options and layer library display.

* Add unit tests for bioxel module and documentation

- Created README.md for test instructions and categories.
- Implemented comprehensive unit tests for the Data, Layer, and utility functions in the bioxel module.
- Added tests for reading NRRD and DICOM formats, data properties, and edge cases.
- Included tests for real data files to ensure functionality with actual datasets.

* feat: Update .gitattributes and .gitignore for improved asset management and ignore patterns

chore: Add app.json and omoolab.css for Obsidian integration

refactor: Clean up AGENTS.md and remove outdated test files

* feat: Update .gitignore to include scipy_ndimage directory

* feat: Update release workflow and manifest for improved dependency management and layer handling

* feat: Update .gitignore and add binary files for scipy_ndimage across multiple platforms

* feat: Add OPSX commands for archiving, exploring, and proposing changes

* feat: Refactor asset library management and update manifest for improved organization

* feat: Downgrade h5py version to 3.14.0 in requirements and manifest

* feat: Update Help operator and panel labels to use English terminology

* Translate documentation to Chinese, add support format details, and enhance styling with new fonts. Update mkdocs configuration for multilingual support and improve package dependencies.

* feat: Remove default version setting from extra configuration in mkdocs.yml

* fix: Update documentation links to point to the correct URLs for Chinese and English versions

* Add documentation for basic usage, supported formats, and performance tips

- Created English and Chinese documentation for basic usage of the add-on, including data download, import, extraction, and rendering steps.
- Added support format documentation listing compatible file types for the add-on.
- Included links to open databases for volumetric data.
- Provided performance improvement tips for voxel reconstruction and rendering, including settings for low-resolution previews and balanced rendering configurations.

* Add OpenSpec skills for change management and exploration

- Implement openspec-apply-change skill for applying tasks from OpenSpec changes.
- Create openspec-archive-change skill for archiving completed changes.
- Introduce openspec-explore skill for exploring ideas and clarifying requirements.
- Add openspec-propose skill for proposing new changes with generated artifacts.
- Migrate source command skills: source-command-opsx-apply, source-command-opsx-archive, source-command-opsx-explore, and source-command-opsx-propose for improved command handling.

* feat: Update version to 2.0.1, refactor asset library handling, and enhance layer import process

* fix: downgrade scipy version to 1.16.3 in build.py and pyproject.toml

* Remove deprecated modules and functions from bioxel package

- Deleted _ni_support.py, _utils.py, and dtype.py as they contained unused or redundant functions.
- Removed the resize function and related utilities from _warps.py to streamline image processing.
- Cleaned up the skimage module by removing unnecessary imports and functions.

* feat: Add SKIP_MODULE_NAMES to exclude specific modules during import and refactor io_worker import logic

* refactor: Remove known limitations section from documentation for EEVEE NEXT support
2026-07-08 13:48:52 +08:00
Nan
ae7868d410 5.0 (#60)
* feat: Add Bioxel asset catalog and layer management functionality

- Introduced a new asset catalog definition file for Blender to manage Bioxel assets.
- Implemented layer caching and snapshot functionality in `layer.py`, allowing for VDB file generation and low-resolution snapshots.
- Created node management functions in `node.py` for handling Bioxel nodes within Blender's Geometry Node Editor.
- Added an operator to extract mesh data from selected nodes in `structure.py`.
- Developed UI panels in `panels.py` for layer management, including import options and layer library display.

* Add unit tests for bioxel module and documentation

- Created README.md for test instructions and categories.
- Implemented comprehensive unit tests for the Data, Layer, and utility functions in the bioxel module.
- Added tests for reading NRRD and DICOM formats, data properties, and edge cases.
- Included tests for real data files to ensure functionality with actual datasets.

* feat: Update .gitattributes and .gitignore for improved asset management and ignore patterns

chore: Add app.json and omoolab.css for Obsidian integration

refactor: Clean up AGENTS.md and remove outdated test files

* feat: Update .gitignore to include scipy_ndimage directory

* feat: Update release workflow and manifest for improved dependency management and layer handling

* feat: Update .gitignore and add binary files for scipy_ndimage across multiple platforms

* feat: Add OPSX commands for archiving, exploring, and proposing changes

* feat: Refactor asset library management and update manifest for improved organization

* feat: Downgrade h5py version to 3.14.0 in requirements and manifest

* feat: Update Help operator and panel labels to use English terminology

* Translate documentation to Chinese, add support format details, and enhance styling with new fonts. Update mkdocs configuration for multilingual support and improve package dependencies.

* feat: Remove default version setting from extra configuration in mkdocs.yml

* fix: Update documentation links to point to the correct URLs for Chinese and English versions

* Add documentation for basic usage, supported formats, and performance tips

- Created English and Chinese documentation for basic usage of the add-on, including data download, import, extraction, and rendering steps.
- Added support format documentation listing compatible file types for the add-on.
- Included links to open databases for volumetric data.
- Provided performance improvement tips for voxel reconstruction and rendering, including settings for low-resolution previews and balanced rendering configurations.
2026-05-26 16:01:29 +08:00
35e405acd8 update version 2025-04-11 10:22:36 +08:00
a6586b7304 bump version to 1.0.8 in pyproject.toml and blender_manifest.toml 2025-04-09 20:48:17 +08:00
Ma Nan
59bf9bff2d Fix compatibility with blender 4.4 (#55)
* migrate from poetry to uv

* fix No module named 'pyopenvdb' in blender 4.4

* update auto_load.py

* add vscode workspace

* update relase workflow
2025-04-09 17:47:06 +08:00
dc7d9382d6 fix: slice viewer change all 3d viewports
fix: eevee env light effect cycles render
feat: add gamma prop to correct color from non-linear image
feat: add "copy transform" node
2024-11-01 11:57:29 +08:00
e5be3ad5db feat: better shader in eevee
feat: add more control to transform node
feat: add env light to reduse volume shadow in eevee
2024-10-30 13:29:53 +08:00
3ca7c2ac5a feat: improve eevee render 2024-10-29 15:14:31 +08:00
86fc18ab69 feat: add help menu
feat: better surface topo
fix: cutter node invert not work
2024-10-10 12:54:51 +08:00
487cea4662 fix: the as color button's text is incorrectly written as "as label"
feat: speed up convertion when as label
feat: add new "Extrude Transform" node
2024-09-27 14:53:47 +08:00
63c593f09a fix: relocate cannot work on missing layer
fix: import fail if label are all zero
fix: add cutter name to node
fix: cannot append node lib file on NAS (UNC path)
fix: join component cause disappear
feat: smooth label
feat: better topo on cutout by range
2024-09-19 12:27:39 +08:00
133702619e fix: join component cause missing
feat: extract mesh from node
2024-09-13 16:42:18 +08:00
655b19bc7c feat: improving the user experience 2024-09-03 17:53:26 +08:00
9e885865f7 feat: layer list system 2024-08-14 14:16:40 +08:00
38fb888f00 fix: color ramp not fit
fix: skip DICOM series option not reset.
fix: combine label only combine 2 layers
2024-08-07 09:42:25 +08:00
2563f398da chore: update version 2024-08-05 15:53:03 +08:00
a6ec769a9b fix: macos-arm64 cannot install
fix: better layer fill smooth filter
2024-08-02 11:34:35 +08:00
ce397b35aa feat: more time sequence choice
fix: contrast formulation cause leak of high value
fix: empty series_id cause fail to read
chore: restructure folder
chore!: change layer vars
BREAKING CHANGE: not support 4.1 any more
2024-08-01 15:50:41 +08:00
488b05f062 chore: update version 2024-07-23 12:31:33 +08:00
854af4c3bc feat: support more format
feat: support .mrc .map
feat: support .ome.tif
feat: improved user experience for importing
feat: better contrast algorithm
2024-07-22 08:51:12 +08:00
b2791e3aae fix: eevee specular too high
feat: add pie cutter
feat: support 4d time data
chora: change operators name
docs: update README.md
2024-07-15 14:25:51 +08:00
8b862b3fe0 feat: add primitive cutter
fix: eevee shadow
fix: save node toggle not work
fix: color over 1.0 fail to render
2024-07-10 12:45:04 +08:00
99ce5c28d0 feat: dramatic reduction in rendering time 🚀
feat: add more support to  eevee render
fix: fail to add utils node inflate
fix: file import button missing
chore: change operator names
BREAKING CHANGE: remove support to blender 4.0
BREAKING CHANGE: remove support to gpu render with cuda
2024-07-09 15:20:26 +08:00
f90bf5c532 chore: change version 2024-07-04 15:05:22 +08:00
1db63dd3db feat: rewrite resize
add more nodes
2024-07-04 13:05:46 +08:00
134d8e382b feat: support eevee 2024-06-12 15:23:09 +08:00
fa031e63f8 feat: redesign nodes 2024-05-29 11:00:38 +08:00
c1886f95f8 docs: mkdocs 2024-05-14 09:39:43 +08:00