Files
Bioxel/.claude/skills/openspec-apply-change/SKILL.md
Nan ae7868d410 5.0 (#60)
* feat: Add Bioxel asset catalog and layer management functionality

- Introduced a new asset catalog definition file for Blender to manage Bioxel assets.
- Implemented layer caching and snapshot functionality in `layer.py`, allowing for VDB file generation and low-resolution snapshots.
- Created node management functions in `node.py` for handling Bioxel nodes within Blender's Geometry Node Editor.
- Added an operator to extract mesh data from selected nodes in `structure.py`.
- Developed UI panels in `panels.py` for layer management, including import options and layer library display.

* Add unit tests for bioxel module and documentation

- Created README.md for test instructions and categories.
- Implemented comprehensive unit tests for the Data, Layer, and utility functions in the bioxel module.
- Added tests for reading NRRD and DICOM formats, data properties, and edge cases.
- Included tests for real data files to ensure functionality with actual datasets.

* feat: Update .gitattributes and .gitignore for improved asset management and ignore patterns

chore: Add app.json and omoolab.css for Obsidian integration

refactor: Clean up AGENTS.md and remove outdated test files

* feat: Update .gitignore to include scipy_ndimage directory

* feat: Update release workflow and manifest for improved dependency management and layer handling

* feat: Update .gitignore and add binary files for scipy_ndimage across multiple platforms

* feat: Add OPSX commands for archiving, exploring, and proposing changes

* feat: Refactor asset library management and update manifest for improved organization

* feat: Downgrade h5py version to 3.14.0 in requirements and manifest

* feat: Update Help operator and panel labels to use English terminology

* Translate documentation to Chinese, add support format details, and enhance styling with new fonts. Update mkdocs configuration for multilingual support and improve package dependencies.

* feat: Remove default version setting from extra configuration in mkdocs.yml

* fix: Update documentation links to point to the correct URLs for Chinese and English versions

* Add documentation for basic usage, supported formats, and performance tips

- Created English and Chinese documentation for basic usage of the add-on, including data download, import, extraction, and rendering steps.
- Added support format documentation listing compatible file types for the add-on.
- Included links to open databases for volumetric data.
- Provided performance improvement tips for voxel reconstruction and rendering, including settings for low-resolution previews and balanced rendering configurations.
2026-05-26 16:01:29 +08:00

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Markdown

---
name: openspec-apply-change
description: Implement tasks from an OpenSpec change. Use when the user wants to start implementing, continue implementation, or work through tasks.
license: MIT
compatibility: Requires openspec CLI.
metadata:
author: openspec
version: "1.0"
generatedBy: "1.3.1"
---
Implement tasks from an OpenSpec change.
**Input**: Optionally specify a change name. If omitted, check if it can be inferred from conversation context. If vague or ambiguous you MUST prompt for available changes.
**Steps**
1. **Select the change**
If a name is provided, use it. Otherwise:
- Infer from conversation context if the user mentioned a change
- Auto-select if only one active change exists
- If ambiguous, run `openspec list --json` to get available changes and use the **AskUserQuestion tool** to let the user select
Always announce: "Using change: <name>" and how to override (e.g., `/opsx:apply <other>`).
2. **Check status to understand the schema**
```bash
openspec status --change "<name>" --json
```
Parse the JSON to understand:
- `schemaName`: The workflow being used (e.g., "spec-driven")
- Which artifact contains the tasks (typically "tasks" for spec-driven, check status for others)
3. **Get apply instructions**
```bash
openspec instructions apply --change "<name>" --json
```
This returns:
- `contextFiles`: artifact ID -> array of concrete file paths (varies by schema - could be proposal/specs/design/tasks or spec/tests/implementation/docs)
- Progress (total, complete, remaining)
- Task list with status
- Dynamic instruction based on current state
**Handle states:**
- If `state: "blocked"` (missing artifacts): show message, suggest using openspec-continue-change
- If `state: "all_done"`: congratulate, suggest archive
- Otherwise: proceed to implementation
4. **Read context files**
Read every file path listed under `contextFiles` from the apply instructions output.
The files depend on the schema being used:
- **spec-driven**: proposal, specs, design, tasks
- Other schemas: follow the contextFiles from CLI output
5. **Show current progress**
Display:
- Schema being used
- Progress: "N/M tasks complete"
- Remaining tasks overview
- Dynamic instruction from CLI
6. **Implement tasks (loop until done or blocked)**
For each pending task:
- Show which task is being worked on
- Make the code changes required
- Keep changes minimal and focused
- Mark task complete in the tasks file: `- [ ]` → `- [x]`
- Continue to next task
**Pause if:**
- Task is unclear → ask for clarification
- Implementation reveals a design issue → suggest updating artifacts
- Error or blocker encountered → report and wait for guidance
- User interrupts
7. **On completion or pause, show status**
Display:
- Tasks completed this session
- Overall progress: "N/M tasks complete"
- If all done: suggest archive
- If paused: explain why and wait for guidance
**Output During Implementation**
```
## Implementing: <change-name> (schema: <schema-name>)
Working on task 3/7: <task description>
[...implementation happening...]
✓ Task complete
Working on task 4/7: <task description>
[...implementation happening...]
✓ Task complete
```
**Output On Completion**
```
## Implementation Complete
**Change:** <change-name>
**Schema:** <schema-name>
**Progress:** 7/7 tasks complete ✓
### Completed This Session
- [x] Task 1
- [x] Task 2
...
All tasks complete! Ready to archive this change.
```
**Output On Pause (Issue Encountered)**
```
## Implementation Paused
**Change:** <change-name>
**Schema:** <schema-name>
**Progress:** 4/7 tasks complete
### Issue Encountered
<description of the issue>
**Options:**
1. <option 1>
2. <option 2>
3. Other approach
What would you like to do?
```
**Guardrails**
- Keep going through tasks until done or blocked
- Always read context files before starting (from the apply instructions output)
- If task is ambiguous, pause and ask before implementing
- If implementation reveals issues, pause and suggest artifact updates
- Keep code changes minimal and scoped to each task
- Update task checkbox immediately after completing each task
- Pause on errors, blockers, or unclear requirements - don't guess
- Use contextFiles from CLI output, don't assume specific file names
**Fluid Workflow Integration**
This skill supports the "actions on a change" model:
- **Can be invoked anytime**: Before all artifacts are done (if tasks exist), after partial implementation, interleaved with other actions
- **Allows artifact updates**: If implementation reveals design issues, suggest updating artifacts - not phase-locked, work fluidly