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docs: update README

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马南
2024-07-22 09:05:52 +08:00
parent 854af4c3bc
commit f07ac1c70c
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4
README.md
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@@ -24,7 +24,7 @@ Bioxel Nodes is a Blender addon for scientific volumetric data visualization. It
| Format | EXT | Test | | Format | EXT | Test |
| ------ | ---------------------------------------- | ------- | | ------ | ---------------------------------------- | ------- |
| DICOM | .dcm, .DICOM | ✅ pass | | DICOM | .dcm, .DCM, .DICOM, .ima, .IMA | ✅ pass |
| BMP | .bmp, .BMP | ✅ pass | | BMP | .bmp, .BMP | ✅ pass |
| JPEG | .jpg, .JPG, .jpeg, .JPEG | ✅ pass | | JPEG | .jpg, .JPG, .jpeg, .JPEG | ✅ pass |
| PNG | .png, .PNG | ✅ pass | | PNG | .png, .PNG | ✅ pass |
@@ -32,6 +32,8 @@ Bioxel Nodes is a Blender addon for scientific volumetric data visualization. It
| Nifti | .nia, .nii, .nii.gz, .hdr, .img, .img.gz | ✅ pass | | Nifti | .nia, .nii, .nii.gz, .hdr, .img, .img.gz | ✅ pass |
| Nrrd | .nrrd, .nhdr | ✅ pass | | Nrrd | .nrrd, .nhdr | ✅ pass |
| HDF5 | .hdf, .h4, .hdf4, .he2, .h5, .hdf5, .he5 | ✅ pass | | HDF5 | .hdf, .h4, .hdf4, .he2, .h5, .hdf5, .he5 | ✅ pass |
| OME | .ome.tiff, .ome.tif | ✅ pass |
| MRC | .mrc, .mrc.gz, .map, .map.gz | ✅ pass |
## Support 4D volumetric data ## Support 4D volumetric data

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docs/index.md
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@@ -17,7 +17,7 @@ Bioxel Nodes is a Blender addon for scientific volumetric data visualization. It
| Format | EXT | Test | | Format | EXT | Test |
| ------ | ---------------------------------------- | ------- | | ------ | ---------------------------------------- | ------- |
| DICOM | .dcm, .DICOM | ✅ pass | | DICOM | .dcm, .DCM, .DICOM, .ima, .IMA | ✅ pass |
| BMP | .bmp, .BMP | ✅ pass | | BMP | .bmp, .BMP | ✅ pass |
| JPEG | .jpg, .JPG, .jpeg, .JPEG | ✅ pass | | JPEG | .jpg, .JPG, .jpeg, .JPEG | ✅ pass |
| PNG | .png, .PNG | ✅ pass | | PNG | .png, .PNG | ✅ pass |
@@ -25,6 +25,8 @@ Bioxel Nodes is a Blender addon for scientific volumetric data visualization. It
| Nifti | .nia, .nii, .nii.gz, .hdr, .img, .img.gz | ✅ pass | | Nifti | .nia, .nii, .nii.gz, .hdr, .img, .img.gz | ✅ pass |
| Nrrd | .nrrd, .nhdr | ✅ pass | | Nrrd | .nrrd, .nhdr | ✅ pass |
| HDF5 | .hdf, .h4, .hdf4, .he2, .h5, .hdf5, .he5 | ✅ pass | | HDF5 | .hdf, .h4, .hdf4, .he2, .h5, .hdf5, .he5 | ✅ pass |
| OME | .ome.tiff, .ome.tif | ✅ pass |
| MRC | .mrc, .mrc.gz, .map, .map.gz | ✅ pass |
## Support 4D volumetric data ## Support 4D volumetric data

8
docs/prepare_data.md
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@@ -6,7 +6,7 @@ First thing first, you need to get your volumetric data ready in disk. Bioxel No
| Format | EXT | Test | | Format | EXT | Test |
| ------ | ---------------------------------------- | ------- | | ------ | ---------------------------------------- | ------- |
| DICOM | .dcm, .DICOM | ✅ pass | | DICOM | .dcm, .DCM, .DICOM, .ima, .IMA | ✅ pass |
| BMP | .bmp, .BMP | ✅ pass | | BMP | .bmp, .BMP | ✅ pass |
| JPEG | .jpg, .JPG, .jpeg, .JPEG | ✅ pass | | JPEG | .jpg, .JPG, .jpeg, .JPEG | ✅ pass |
| PNG | .png, .PNG | ✅ pass | | PNG | .png, .PNG | ✅ pass |
@@ -21,6 +21,8 @@ First thing first, you need to get your volumetric data ready in disk. Bioxel No
| LSM | .lsm, .LSM | yet | | LSM | .lsm, .LSM | yet |
| MINC | .mnc, .MNC | yet | | MINC | .mnc, .MNC | yet |
| MRC | .mrc, .rec | yet | | MRC | .mrc, .rec | yet |
| OME | .ome.tiff, .ome.tif | ✅ pass |
| MRC | .mrc, .mrc.gz, .map, .map.gz | ✅ pass |
## Download Data from Internet ## Download Data from Internet
@@ -32,10 +34,12 @@ If you don't have any volumetric data, you can access open research data from li
| ------------------------------------------------------------------------------------ | ------------------ | | ------------------------------------------------------------------------------------ | ------------------ |
| [MorphoSource](https://www.morphosource.org/) | Open Research Data | | [MorphoSource](https://www.morphosource.org/) | Open Research Data |
| [Dryad](https://datadryad.org) | Open Research Data | | [Dryad](https://datadryad.org) | Open Research Data |
| [Cell Image Library](http://cellimagelibrary.org/home) | Cells |
| [OpenOrganelle](https://openorganelle.janelia.org/datasets) | Cells | | [OpenOrganelle](https://openorganelle.janelia.org/datasets) | Cells |
| [Allen Cell Explorer](https://www.allencell.org/3d-cell-viewer.html) | Cells |
| [EMDB](https://www.ebi.ac.uk/emdb/) | Protein, Viruses |
| [Embodi3D](https://www.embodi3d.com/files/category/37-medical-scans/) | Medical Images | | [Embodi3D](https://www.embodi3d.com/files/category/37-medical-scans/) | Medical Images |
| [Github](https://github.com/sfikas/medical-imaging-datasets) | Medical Images | | [Github](https://github.com/sfikas/medical-imaging-datasets) | Medical Images |
| [NIHR](https://nhsx.github.io/open-source-imaging-data-sets/) | Medical Images | | [NIHR](https://nhsx.github.io/open-source-imaging-data-sets/) | Medical Images |
| [Medical Segmentation Decathlon](http://medicaldecathlon.com/) | Medical Images | | [Medical Segmentation Decathlon](http://medicaldecathlon.com/) | Medical Images |
| [Allen Cell Explorer](https://www.allencell.org/3d-cell-viewer.html) | Cells |
| [Visible Human Project](https://www.nlm.nih.gov/research/visible/visible_human.html) | Medical Images | | [Visible Human Project](https://www.nlm.nih.gov/research/visible/visible_human.html) | Medical Images |