5.0 (#60)

* feat: Add Bioxel asset catalog and layer management functionality

- Introduced a new asset catalog definition file for Blender to manage Bioxel assets.
- Implemented layer caching and snapshot functionality in `layer.py`, allowing for VDB file generation and low-resolution snapshots.
- Created node management functions in `node.py` for handling Bioxel nodes within Blender's Geometry Node Editor.
- Added an operator to extract mesh data from selected nodes in `structure.py`.
- Developed UI panels in `panels.py` for layer management, including import options and layer library display.

* Add unit tests for bioxel module and documentation

- Created README.md for test instructions and categories.
- Implemented comprehensive unit tests for the Data, Layer, and utility functions in the bioxel module.
- Added tests for reading NRRD and DICOM formats, data properties, and edge cases.
- Included tests for real data files to ensure functionality with actual datasets.

* feat: Update .gitattributes and .gitignore for improved asset management and ignore patterns

chore: Add app.json and omoolab.css for Obsidian integration

refactor: Clean up AGENTS.md and remove outdated test files

* feat: Update .gitignore to include scipy_ndimage directory

* feat: Update release workflow and manifest for improved dependency management and layer handling

* feat: Update .gitignore and add binary files for scipy_ndimage across multiple platforms

* feat: Add OPSX commands for archiving, exploring, and proposing changes

* feat: Refactor asset library management and update manifest for improved organization

* feat: Downgrade h5py version to 3.14.0 in requirements and manifest

* feat: Update Help operator and panel labels to use English terminology

* Translate documentation to Chinese, add support format details, and enhance styling with new fonts. Update mkdocs configuration for multilingual support and improve package dependencies.

* feat: Remove default version setting from extra configuration in mkdocs.yml

* fix: Update documentation links to point to the correct URLs for Chinese and English versions

* Add documentation for basic usage, supported formats, and performance tips

- Created English and Chinese documentation for basic usage of the add-on, including data download, import, extraction, and rendering steps.
- Added support format documentation listing compatible file types for the add-on.
- Included links to open databases for volumetric data.
- Provided performance improvement tips for voxel reconstruction and rendering, including settings for low-resolution previews and balanced rendering configurations.

build.py

@@ -12,12 +12,14 @@ class Platform:
     blender_tag: str
 
 
-required_packages = ["SimpleITK==2.3.1",
+required_packages = ["SimpleITK==2.5.5",
                      "pyometiff==1.0.0",
                      "mrcfile==1.5.1",
-                     "h5py==3.11.0",
+                     "h5py==3.14.0",
                      "transforms3d==0.4.2",
-                     "tifffile==2024.7.24"]
+                     "tifffile==2024.7.24",
+                     "matplotlib==3.10.7",
+                     "pillow==11.2.1"]
 
 
 platforms = {"windows-x64": Platform(pypi_suffix="win_amd64",
@@ -40,7 +42,7 @@ def run_python(args: str):
     subprocess.run([python] + args.split(" "))
 
 
-def build_extension(platform: Platform, python_version="3.11") -> None:
+def build_extension(platform: Platform, python_version: str) -> None:
     wheel_dirpath = Path("./src/bioxelnodes/wheels")
     toml_filepath = Path("./src/bioxelnodes/blender_manifest.toml")
     scipy_ndimage_dirpath = Path("./scipy_ndimage", platform.blender_tag)
@@ -50,26 +52,28 @@ def build_extension(platform: Platform, python_version="3.11") -> None:
         f"-m pip download {' '.join(required_packages)} --dest {wheel_dirpath.as_posix()} --only-binary=:all: --python-version={python_version} --platform={platform.pypi_suffix}"
     )
 
-    for f in wheel_dirpath.glob('*.whl'):
+    for f in wheel_dirpath.glob("*.whl"):
         if any([package in f.name for package in packages_to_remove]):
             f.unlink(missing_ok=True)
 
-        elif platform.blender_tag == "macos-arm64" and \
-                "lxml" in f.name and "universal2" in f.name:
-            f.rename(Path(f.parent,
-                          f.name.replace("universal2", "arm64")))
+        elif (
+            platform.blender_tag == "macos-arm64"
+            and "lxml" in f.name
+            and "universal2" in f.name
+        ):
+            f.rename(Path(f.parent, f.name.replace("universal2", "arm64")))
 
     for ndimage_filepath in scipy_ndimage_dirpath.iterdir():
         to_filepath = Path("./src/bioxelnodes/bioxel/scipy", ndimage_filepath.name)
         shutil.copy(ndimage_filepath, to_filepath)
-
+        
     # Load the TOML file
     with toml_filepath.open("r") as file:
         manifest = tomlkit.parse(file.read())
 
     manifest["platforms"] = [platform.blender_tag]
-    manifest["wheels"] = [f"./wheels/{f.name}"
-                          for f in wheel_dirpath.glob('*.whl')]
+    manifest["wheels"] = [
+        f"./wheels/{f.name}" for f in wheel_dirpath.glob("*.whl")]
 
     # build.append('generated', generated)
     # manifest.append('build', build)
@@ -82,8 +86,9 @@ def build_extension(platform: Platform, python_version="3.11") -> None:
 
 def main():
     platform_name = sys.argv[1]
+    python_version = sys.argv[2] or "3.11"
     platform = platforms[platform_name]
-    build_extension(platform)
+    build_extension(platform, python_version)
 
 
 if __name__ == "__main__":