feat: dramatic reduction in rendering time 🚀
feat: add more support to eevee render fix: fail to add utils node inflate fix: file import button missing chore: change operator names BREAKING CHANGE: remove support to blender 4.0 BREAKING CHANGE: remove support to gpu render with cuda
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@@ -13,7 +13,7 @@ from . import skimage as ski
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from .nodes import custom_nodes
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from .props import BIOXELNODES_Series
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from .utils import (calc_bbox_verts, get_all_layers, get_container_from_selection, get_layer, get_text_index_str,
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get_node_by_type, hide_in_ray, lock_transform, save_vdb, show_message)
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get_nodes_by_type, hide_in_ray, lock_transform, move_node_between_nodes, move_node_to_node, save_vdb, show_message)
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try:
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import SimpleITK as sitk
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@@ -233,6 +233,8 @@ class ImportVolumeDataDialog(bpy.types.Operator):
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meta['spacing'][2] / orig_spacing[2] * bioxel_size
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)
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dtype_index = volume.dtype.num
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layer_shape = get_layer_shape(
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bioxel_size, meta['shape'], orig_spacing)
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@@ -285,10 +287,9 @@ class ImportVolumeDataDialog(bpy.types.Operator):
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)
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container = bpy.context.active_object
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bbox_verts = calc_bbox_verts((0, 0, 0), volume.shape)
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bbox_verts = calc_bbox_verts((0, 0, 0), layer_shape)
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for index, vert in enumerate(container.data.vertices):
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bbox_transform = transfrom
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vert.co = bbox_transform @ mathutils.Vector(bbox_verts[index])
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vert.co = transfrom @ mathutils.Vector(bbox_verts[index])
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container.matrix_world = mat_ras2blender @ mat_scene_scale
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container.name = container_name
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@@ -297,14 +298,14 @@ class ImportVolumeDataDialog(bpy.types.Operator):
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container['bioxel_container'] = True
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container['scene_scale'] = scene_scale
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bpy.ops.node.new_geometry_nodes_modifier()
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container_node_tree = container.modifiers[0].node_group
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input_node = get_node_by_type(container_node_tree.nodes,
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'NodeGroupInput')[0]
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container_node_tree.links.remove(input_node.outputs[0].links[0])
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container_node_group = container.modifiers[0].node_group
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input_node = get_nodes_by_type(container_node_group,
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'NodeGroupInput')[0]
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container_node_group.links.remove(input_node.outputs[0].links[0])
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else:
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container = bpy.data.objects[self.container]
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container_node_tree = container.modifiers[0].node_group
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container_node_group = container.modifiers[0].node_group
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preferences = context.preferences.addons[__package__].preferences
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loc, rot, sca = transfrom.decompose()
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@@ -316,7 +317,7 @@ class ImportVolumeDataDialog(bpy.types.Operator):
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grid = vdb.FloatGrid()
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volume = volume.copy().astype(np.float32)
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grid.copyFromArray(volume)
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grid.transform = vdb.createLinearTransform(transfrom.transposed())
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# grid.transform = vdb.createLinearTransform(transfrom.transposed())
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grid.name = layer_type
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vdb_path = save_vdb([grid], context)
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@@ -353,26 +354,31 @@ class ImportVolumeDataDialog(bpy.types.Operator):
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print(f"Creating layer ...")
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bpy.ops.node.new_geometry_nodes_modifier()
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node_tree = layer.modifiers[0].node_group
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nodes = node_tree.nodes
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links = node_tree.links
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node_group = layer.modifiers[0].node_group
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input_node = get_node_by_type(nodes, 'NodeGroupInput')[0]
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output_node = get_node_by_type(nodes, 'NodeGroupOutput')[0]
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input_node = get_nodes_by_type(node_group, 'NodeGroupInput')[0]
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output_node = get_nodes_by_type(node_group, 'NodeGroupOutput')[0]
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to_layer_node = custom_nodes.add_node(nodes,
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to_layer_node = custom_nodes.add_node(node_group,
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"BioxelNodes__ConvertToLayer")
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links.new(input_node.outputs[0], to_layer_node.inputs[0])
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links.new(to_layer_node.outputs[0], output_node.inputs[0])
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node_group.links.new(input_node.outputs[0],
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to_layer_node.inputs[0])
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node_group.links.new(to_layer_node.outputs[0],
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output_node.inputs[0])
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# for compatibility to old vdb
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to_layer_node.inputs['Not Transfromed'].default_value = True
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to_layer_node.inputs['Layer ID'].default_value = random.randint(-200000000,
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200000000)
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to_layer_node.inputs['Data Type'].default_value = dtype_index
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to_layer_node.inputs['Bioxel Size'].default_value = bioxel_size
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to_layer_node.inputs['Shape'].default_value = layer_shape
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to_layer_node.inputs['Origin'].default_value = layer_origin
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to_layer_node.inputs['Rotation'].default_value = layer_rotation
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move_node_between_nodes(to_layer_node, [input_node, output_node])
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return layer
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if self.read_as == "labels":
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@@ -386,29 +392,29 @@ class ImportVolumeDataDialog(bpy.types.Operator):
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for i in range(orig_max):
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label = volume == np.full_like(volume, i+1)
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print(f"Resampling...")
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label = ski.resize(label.astype(np.float32),
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label = ski.resize(label,
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layer_shape,
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anti_aliasing=True)
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preserve_range=True,
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anti_aliasing=False)
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layer = create_layer(volume=label,
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layer_name=f"{container_name}_{layer_name}_{i+1}",
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layer_type="label")
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# Deselect all nodes first
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for node in container_node_tree.nodes:
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if node.select:
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node.select = False
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mask_node = custom_nodes.add_node(container_node_tree.nodes,
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mask_node = custom_nodes.add_node(container_node_group,
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'BioxelNodes_MaskByLabel')
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mask_node.label = f"{layer_name}_{i+1}"
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mask_node.inputs[0].default_value = layer
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# Connect to output if no output linked
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output_node = get_node_by_type(container_node_tree.nodes,
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'NodeGroupOutput')[0]
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output_node = get_nodes_by_type(container_node_group,
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'NodeGroupOutput')[0]
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if len(output_node.inputs[0].links) == 0:
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container_node_tree.links.new(mask_node.outputs[0],
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output_node.inputs[0])
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container_node_group.links.new(mask_node.outputs[0],
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output_node.inputs[0])
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move_node_to_node(mask_node, output_node, (-300, 0))
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else:
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move_node_to_node(mask_node, output_node,
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(0, -100 * (i+1)))
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else:
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if volume.ndim == 4:
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@@ -420,7 +426,7 @@ class ImportVolumeDataDialog(bpy.types.Operator):
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# volume = np.multiply(volume, 255.0 / imax_in, dtype=np.float32)
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# elif volume.dtype.kind == 'i':
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# volume = volume.astype(np.float32)
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# should not change any value!
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volume = volume.astype(np.float32)
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@@ -442,27 +448,27 @@ class ImportVolumeDataDialog(bpy.types.Operator):
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layer_name=f"{container_name}_{layer_name}",
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layer_type="scalar")
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layer_node_tree = layer.modifiers[0].node_group
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to_layer_node = layer_node_tree.nodes['BioxelNodes__ConvertToLayer']
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layer_node_group = layer.modifiers[0].node_group
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to_layer_node = layer_node_group.nodes['BioxelNodes__ConvertToLayer']
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to_layer_node.inputs['Scalar Offset'].default_value = scalar_offset
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to_layer_node.inputs['Scalar Max'].default_value = orig_max
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to_layer_node.inputs['Scalar Min'].default_value = orig_min
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# Deselect all nodes first
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for node in container_node_tree.nodes:
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if node.select:
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node.select = False
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mask_node = custom_nodes.add_node(container_node_tree.nodes,
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mask_node = custom_nodes.add_node(container_node_group,
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'BioxelNodes_MaskByThreshold')
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mask_node.label = layer_name
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mask_node.inputs[0].default_value = layer
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# Connect to output if no output linked
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output_node = get_node_by_type(container_node_tree.nodes,
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'NodeGroupOutput')[0]
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output_node = get_nodes_by_type(container_node_group,
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'NodeGroupOutput')[0]
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if len(output_node.inputs[0].links) == 0:
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container_node_tree.links.new(mask_node.outputs[0],
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output_node.inputs[0])
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container_node_group.links.new(mask_node.outputs[0],
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output_node.inputs[0])
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move_node_to_node(mask_node, output_node, (-300, 0))
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else:
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move_node_to_node(mask_node, output_node, (0, -100))
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bpy.context.view_layer.objects.active = container
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@@ -470,6 +476,7 @@ class ImportVolumeDataDialog(bpy.types.Operator):
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if preferences.do_change_render_setting and is_first_import:
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bpy.context.scene.render.engine = 'CYCLES'
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try:
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bpy.context.scene.cycles.shading_system = True
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bpy.context.scene.cycles.volume_bounces = 12
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bpy.context.scene.cycles.transparent_max_bounces = 16
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bpy.context.scene.cycles.volume_preview_step_rate = 10
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@@ -489,8 +496,8 @@ class ImportVolumeDataDialog(bpy.types.Operator):
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volume_dtype = "Label"
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elif self.read_as == "scalar":
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volume_dtype = "Scalar"
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title = f"Import '{volume_dtype}' Layer (Add to Container: {self.container})" \
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if self.container != "" else f"Import '{volume_dtype}' Layer (Init a Container)"
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title = f"Import as **{volume_dtype}** (Add to Container: {self.container})" \
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if self.container != "" else f"Import as **{volume_dtype}** (Init a Container)"
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context.window_manager.invoke_props_dialog(self,
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width=500,
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title=title)
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@@ -512,10 +519,9 @@ class ImportVolumeDataDialog(bpy.types.Operator):
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layer_size_text = f"Size will be: ({layer_size[0]:.2f}, {layer_size[1]:.2f}, {layer_size[2]:.2f}) m"
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layout = self.layout
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panel = layout.box()
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if self.container == "":
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panel.prop(self, "container_name")
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panel.prop(self, "layer_name")
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layout.prop(self, "container_name")
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layout.prop(self, "layer_name")
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panel = layout.box()
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panel.prop(self, "bioxel_size")
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@@ -575,7 +581,16 @@ class ParseVolumeData(bpy.types.Operator):
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print("Collecting Meta Data...")
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volume, meta = parse_volume_data(self.filepath)
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do_orient = ext not in SEQUENCE_EXTS or ext in DICOM_EXTS
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if self.read_as == "labels":
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not_int = volume.dtype.kind != "b" and volume.dtype.kind != "i" and volume.dtype.kind != "u"
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too_large = np.max(volume) > 100
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if not_int or too_large:
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self.report(
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{"WARNING"}, "This volume data does not looks like labels, please check again.")
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return {'CANCELLED'}
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# do_orient = ext not in SEQUENCE_EXTS or ext in DICOM_EXTS
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orig_shape = meta['shape']
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orig_spacing = meta['spacing']
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@@ -601,7 +616,7 @@ class ParseVolumeData(bpy.types.Operator):
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orig_spacing=orig_spacing,
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bioxel_size=bioxel_size,
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series_id=self.series_id or "",
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do_orient=do_orient,
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# do_orient=do_orient,
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container=self.container,
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read_as=self.read_as,
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scene_scale=scene_scale
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@@ -619,7 +634,7 @@ class ParseVolumeData(bpy.types.Operator):
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if not self.filepath and not self.directory:
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return {'CANCELLED'}
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show_message('Reading image data, it may take a while...',
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show_message('Parsing volume data, it may take a while...',
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'Please be patient...')
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if get_ext(self.filepath) == '.dcm':
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@@ -675,7 +690,8 @@ class ImportVolumeData():
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bpy.ops.bioxelnodes.parse_volume_data(
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'INVOKE_DEFAULT',
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filepath=self.filepath,
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directory=self.directory
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directory=self.directory,
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read_as=self.read_as
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)
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return {'FINISHED'}
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@@ -745,7 +761,7 @@ class AddVolumeData(bpy.types.Operator):
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class ExportVolumeData(bpy.types.Operator):
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bl_idname = "bioxelnodes.export_volume_data"
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bl_label = "Export Layer"
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bl_label = "Export Bioxel as VDB"
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bl_description = "Export Bioxel Layer as VDB"
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bl_options = {'UNDO'}
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