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fix: color ramp not fit

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fix: skip DICOM series option not reset.
fix: combine label only combine 2 layers
This commit is contained in:
马南
2024-08-07 09:42:25 +08:00
parent 2429eef5e0
commit 38fb888f00
6 changed files with 27 additions and 18 deletions
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28
bioxelnodes/bioxel/layer.py
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@@ -3,6 +3,7 @@ import numpy as np
from . import scipy
from . import skimage as ski
from . import scipy as ndi
# 3rd-party
import transforms3d
@@ -97,36 +98,43 @@ class Layer():
_mask = np.expand_dims(_mask, axis=-1)
self.data = _mask * value + (1-_mask) * self.data
def resize(self, shape:tuple, progress_callback=None):
def resize(self, shape: tuple, progress_callback=None):
if len(shape) != 3:
raise Exception("Shape must be 3 dim")
data = self.data
order = 0 if self.dtype == bool else 1
# TXYZC > TXYZ
if self.kind in ['label', 'scalar']:
data = np.amax(data, -1)
if self.kind in ['scalar']:
dtype = data.dtype
data = data.astype(np.float32)
# if self.kind in ['scalar']:
# dtype = data.dtype
# data = data.astype(np.float32)
data_frames = ()
for f in range(self.frame_count):
if progress_callback:
progress_callback(f, self.frame_count)
frame = ski.resize(data[f, :, :, :],
shape,
preserve_range=True,
anti_aliasing=data.dtype.kind != "b")
# frame = ski.resize(data[f, :, :, :],
# shape,
# preserve_range=True,
# anti_aliasing=data.dtype.kind != "b")
factors = np.divide(self.shape, shape)
zoom_factors = [1 / f for f in factors]
frame = ndi.zoom(data[f, :, :, :],
zoom_factors,
order=order)
data_frames += (frame,)
data = np.stack(data_frames)
if self.kind in ['scalar']:
data = data.astype(dtype)
# if self.kind in ['scalar']:
# data = data.astype(dtype)
# TXYZ > TXYZC
if self.kind in ['label', 'scalar']: